I just hope there is no speed cap on DA because I just purchased it and wouldn't have bought it had I known.
I purchased DA prior to its release but I have not tried it yet since I'm finishing a very long DL game. So this reply is based on what I have read on the GalCivII forums. In DA:
(1) cost and size of engines have been increased
(2) the Yor have a super ability that limits the speed of alien ships in their region of influence to a speed of 4
(3) there is a mega event that limits ships to a speed of 5
There are three solutions to (2):
(a) don't play games with the Yor
(

play as the Yor; you can also use this super ability to slow down your alien neighbors during the colonization phase
(c) the speed cap only applies after a non-Yor ship has completed the turn which places it in the Yor's zone of influence. Place your fast troop transports just outside the Yor's zone and on the next turn head straight to the nearby planet(s) extending the zone. This way you should reach the planet(s) before the speed cap applies. After you capture the planet(s) the Yor's zone of influence will sink.
At game startup you can disable mega events or if mega event (3) occurs, reload the game from a recent save.