I want, in ascending (least to most) order:
1) The "Next" button to choose the next planet alphabetically, or for you to be able to select the criteria used in picking a planet "Next." I name my planets with prefixes based on their use, which helps immensely. "E (planetname)" worlds are economic, R is research, M is manufacturing, C is all three (combo), and I usually have a couple that are MR, RE, or ME. It's great for the lists you can alphabetize, but I wish it'd work for "Next."
2) I want the ability to set map pins of various sorts. It's hard to find a specific ship or planet in a Gigantic galaxy (once it's all developed), but it takes longer to use the lists because of all the loading time (on my 3.2 Ghz processor

). If I could make a stationary map pin that flashes on command (or even constantly but can be turned off, much as you can disable planets and stars on the map), or a flashing beacon that can be assigned to ships and fleets so that it moves with them, I'd save a lot of time that could be better spent waiting for the Turn button to come up again.
3) I WANT TO TURN OFF THAT [insert viscious serious of expletives here] AUTO-FOCUS. I know it's going away in 1.2, BUT GYAAAAAAAH! I'M TIRED OF WAITING! IT'S FREAKING IMPOSSIBLE TO CONTROL ANYTHING WITH THAT [expletives again] "FEATURE" PULLING ME TWENTY [expletives] SECTORS AWAY FIFTY [expletives, lots of them] TIMES IN A ROW WHILE I MANAGE A FLEET.