In v1.2 a new option was added to allow the AI extra CPU time. Currently it just lets the AI redesign its ships more frequently than the base once per year. How often does the AI get to redesign ships with this selected? Does selecting it raise your MV score?
I play games on very fast research so a lot happens in a year. Not enabling this feature would cripple the AI on very fast research. Perhaps the AI redesign frequency should be keyed to the research rate or every time the AI gets a tech that affects ship design.