I had 1.2 installed. I then installed the bonus materials and the collector's edition materials. Now there's two problems:

1) The ship point destination circle, weeks to travel, and dotted line don't show up on map when you click to your destination.

2) The parts boxes (above model) don't show up in the ship design mode.

I thought the problem was I was using gray as a race color, but then I tried blue and the problem didn't go away.

I thought the problem might be because I had a custom race, but the problem remained when I switched to human.

I will be uninstalling the game and try installing the bonus and collector's edition materials and THEN upgrade to 1.2 and see if that fixes the problem.