I'm having an issue with minor races with the latest patch, in that whenever I start creating transports and have them in my space (usally across the entire galaxy), they will immediately declare war, stating that I have military units parked around their system. I'm playing in a medium galaxy, at Genius level intelligence for all races, and my transports are parked near my homeworld. The minor races (this has happened twice now) are at the opposite side of the galaxy in other civ's sphere of influence. There are no military units of mine even close.