From the list of
WWII US Navy hull designations posted by liveload, here's a few that made sense for the ship missions that I commonly build:
AGF (Auxiliary General Flagship) - Flagship
AGS (Auxiliary Geographical Survey) >> ASC (Auxiliary Stellar Cartography) - Scout ship
ARS (Auxiliary Repair, Salvage) - Salvage ship, for anomalies
YP (Yard Patrol craft "Yippies") - defenders
PF (Patrol Frigate) - small-hull anti-insurgency
PE (Patrol Escourt) - tiny-hull fighter wings
PY (Patrol Yacht) - converted yacht, for those purchased scouts
XAK (Cargo/Merchant Marine) - freighters
LCI (Landing Craft, Infantry) - troop transport
DD (Destroyer) - medium-hull combat vessel
CL (Light Cruiser) - early large-hull or late medium-hull combat vessel
CA (Cruiser) - large-hull combat vessel [rarely used]
BC (Battle Cruiser) - late model large-hull or early huge-hull [haven't built one]
BB (Battleship) - huge-hull war ship [haven't built one]